| 1987 | Dr. Hsien-Lin Chang Award, Honor for the best intern doctor, Tri-Service General Hospital, Taipei, Taiwan |
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| 1989 | Dr. Shou-Hwa Han Award, Honor for outstanding research on immunology, National Defense Medical Center, Taipei, Taiwan |
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| 1991 | Dr. O.K. Kao Award, Honor for excellent teacher, National Defense Medical Center, Taipei, Taiwan |
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| 1995 | Lieberman Award, Honor for Stanford outstanding PhD student who intends to pursue a career in academic medicine, Stanford University, USA |
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| 1997 | Raffel Award, Honor for outstanding accomplishment in graduate study, Stanford University, USA |
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| 1998 | Excellent Teacher Award, Ministry of National Defense, R.O.C. |
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| 1999 | Outstanding Military Doctor Award, Ministry of National Defense, R.O.C. |
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| 1999 | Outstanding Alumni Award, Stanford University, USA |
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| 2001 | Excellent Teacher Award, Ministry of National Defense, R.O.C. |
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| 2002 | Excellent Teacher Award, Ministry of National Defense, R.O.C. |
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| 2003 | Excellent Teacher Award, Ministry of National Defense, R.O.C. |
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| 2003 | Military Award for Outstanding Performance, Ministry of National Defense, R.O.C. |
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| 2004 | Excellent Teacher Award, Ministry of National Defense, R.O.C. |
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| 2004 | Outstanding Award of SCI research articles, National Defense Medical Center. |
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| 2005 | Y. Z. Hsu Scientific Paper Award, Far Eastern Y. Z. Hsu Science and Technology Memorial Foundation. |
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| 2006 | Excellent Teacher Award, Ministry of National Defense, R.O.C. |
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| 2007 | Excellent Teacher Award, Ministry of National Defense, R.O.C. |
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| 2008 | Excellent Teacher Award, Ministry of National Defense, R.O.C. |
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| 2008 | Outstanding Award of SCI research articles, National Defense Medical Center. |
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| 2009 | Outstanding Award of SCI research articles, National Defense Medical Center. |
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| 2009 | Outstanding Research Award (2009), Chinese Society of Immunology, R.O.C. |
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| 2010 | Excellent Teacher Award, Ministry of National Defense, R.O.C. |
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| 2010 | Outstanding Award of SCI research articles, National Defense Medical Center. |
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| 2011 | Excellent Teacher Award, Ministry of National Defense, R.O.C. |
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| 2011-2014 | Outstanding Research Award, National Science Council, R.O.C. |
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| 2014 | Outstanding Contribution Award, The Chinese-Taipei Society of Laboratory Animal Sciences, R.O.C. |
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| 2014 | Outstanding Award of SCI research articles, National Defense Medical Center. |
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| 2015 | The 59th Academic Award, Ministry of Education, R.O.C. |
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| 2016-2019 | Outstanding Research Award, Ministry of Science and Technology, R.O.C. |
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| 2018 | The Health and Welfare Professional Medal, Ministry of Health and Welfare, R.O.C. |
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| 2020 | Futuretech Award, Ministry of Science and Technology, R.O.C. |
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| 2022 | Futuretech Award, Ministry of Science and Technology, R.O.C. |
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